Dataset

Structure and function of picoplankton and virus communities along zonal gradients in the South Pacific Ocean

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Picoplankton (0.2-2.7 µm fraction) and virus (<0.22 µm fraction) samples were obtained on the BiG-RAPA (Biogeochemical Gradients Role in Arranging Planktonic Assemblages) expedition in the late austral spring of 2010. Additional samples obtained during this expedition include whole community biomass (>0.22 µm fraction) samples that profile a deep (150 m) subsurface chlorophyll maximum in the South Pacific Gyre. High throughput, short read, shotgun sequencing was used to produce metagenomic data from the extracted DNA of these samples. These data enable the assessment of how picoplankton and viral populations are structured along strong physical and chemical gradients on a zonal transect from the upwelling along the western coast of South America to the oligotrophic gyre in the South Pacific.

Published: September 20, 2022 at 12:42

URL: https://hosted-datasets.gbif.org/mgnify/MGYS00004709.zip

MASSACHUSETTS INSTITUTE OF TECHNOLOGY
MASSACHUSETTS INSTITUTE OF TECHNOLOGY

14,550
occurrence records
1,107
taxa
152
species

Taxa

Missing and invalid fields

Field Missing Invalid
coordinateUncertaintyInMeters 14,550
100.0%
eventDate 14,550
100.0%
maximumDepthInMeters 14,550
100.0%
minimumDepthInMeters 14,550
100.0%
occurrenceStatus 14,550
100.0%
scientificNameID 14,550
100.0%

Quality flags

The OBIS data quality flags are documented at https://github.com/iobis/obis-qc.

Flag Dropped Records
NO_DEPTH 14,550
100.0%
NO_MATCH 4,419
30.4%
MARINE_UNSURE 685
4.7%
NO_ACCEPTED_NAME 110
0.8%
WORMS_ANNOTATION_UNRESOLVABLE 57
0.4%
NOT_MARINE 21
0.1%
WORMS_ANNOTATION_REJECT_AMBIGUOUS 3
0.0%

Measurement types

DNA derived data